Evolutionary Characters, Phenotypes and Ontologies: Curating Data from the Systematic Biology Literature
Identifieur interne : 000606 ( Main/Exploration ); précédent : 000605; suivant : 000607Evolutionary Characters, Phenotypes and Ontologies: Curating Data from the Systematic Biology Literature
Auteurs : Wasila M. Dahdul [États-Unis] ; James P. Balhoff [États-Unis] ; Jeffrey Engeman [États-Unis] ; Terry Grande [États-Unis] ; Eric J. Hilton [États-Unis] ; Cartik Kothari [États-Unis] ; Hilmar Lapp [États-Unis] ; John G. Lundberg [États-Unis] ; Peter E. Midford [États-Unis] ; Todd J. Vision [États-Unis] ; Monte Westerfield [États-Unis] ; Paula M. Mabee [États-Unis]Source :
- PLoS ONE [ 1932-6203 ] ; 2010.
Abstract
The wealth of phenotypic descriptions documented in the published articles, monographs, and dissertations of phylogenetic systematics is traditionally reported in a free-text format, and it is therefore largely inaccessible for linkage to biological databases for genetics, development, and phenotypes, and difficult to manage for large-scale integrative work. The Phenoscape project aims to represent these complex and detailed descriptions with rich and formal semantics that are amenable to computation and integration with phenotype data from other fields of biology. This entails reconceptualizing the traditional free-text characters into the computable Entity-Quality (EQ) formalism using ontologies.
We used ontologies and the EQ formalism to curate a collection of 47 phylogenetic studies on ostariophysan fishes (including catfishes, characins, minnows, knifefishes) and their relatives with the goal of integrating these complex phenotype descriptions with information from an existing model organism database (zebrafish,
The challenges we encountered and many of the curation standards and methods for improving consistency that we developed are generally applicable to any effort to represent phenotypes using ontologies. This is because an ontological representation of the detailed variations in phenotype, whether between mutant or wildtype, among individual humans, or across the diversity of species, requires a process by which a precise combination of terms from domain ontologies are selected and organized according to logical relations. The efficiencies that we have developed in this process will be useful for any attempt to annotate complex phenotypic descriptions using ontologies. We also discuss some ramifications of EQ representation for the domain of systematics.
Url:
DOI: 10.1371/journal.pone.0010708
PubMed: 20505755
PubMed Central: 2873956
Affiliations:
- États-Unis
- Caroline du Nord, Dakota du Sud, Illinois, Oregon, Pennsylvanie, Virginie
- Chapel Hill (Caroline du Nord)
- Université de Caroline du Nord à Chapel Hill
Links toward previous steps (curation, corpus...)
- to stream Pmc, to step Corpus: 000182
- to stream Pmc, to step Curation: 000182
- to stream Pmc, to step Checkpoint: 000148
- to stream Ncbi, to step Merge: 000080
- to stream Ncbi, to step Curation: 000080
- to stream Ncbi, to step Checkpoint: 000080
- to stream Main, to step Merge: 000611
- to stream Main, to step Curation: 000606
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Evolutionary Characters, Phenotypes and Ontologies: Curating Data from the Systematic Biology Literature</title>
<author><name sortKey="Dahdul, Wasila M" sort="Dahdul, Wasila M" uniqKey="Dahdul W" first="Wasila M." last="Dahdul">Wasila M. Dahdul</name>
<affiliation wicri:level="2"><nlm:aff id="aff1"><addr-line>Department of Biology, University of South Dakota, Vermillion, South Dakota, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Biology, University of South Dakota, Vermillion, South Dakota</wicri:regionArea>
<placeName><region type="state">Dakota du Sud</region>
</placeName>
</affiliation>
<affiliation wicri:level="2"><nlm:aff id="aff2"><addr-line>National Evolutionary Synthesis Center, Durham, North Carolina, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>National Evolutionary Synthesis Center, Durham, North Carolina</wicri:regionArea>
<placeName><region type="state">Caroline du Nord</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Balhoff, James P" sort="Balhoff, James P" uniqKey="Balhoff J" first="James P." last="Balhoff">James P. Balhoff</name>
<affiliation wicri:level="2"><nlm:aff id="aff2"><addr-line>National Evolutionary Synthesis Center, Durham, North Carolina, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>National Evolutionary Synthesis Center, Durham, North Carolina</wicri:regionArea>
<placeName><region type="state">Caroline du Nord</region>
</placeName>
</affiliation>
<affiliation wicri:level="4"><nlm:aff id="aff3"><addr-line>Department of Biology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Biology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina</wicri:regionArea>
<placeName><region type="state">Caroline du Nord</region>
<settlement type="city">Chapel Hill (Caroline du Nord)</settlement>
</placeName>
<orgName type="university">Université de Caroline du Nord à Chapel Hill</orgName>
</affiliation>
</author>
<author><name sortKey="Engeman, Jeffrey" sort="Engeman, Jeffrey" uniqKey="Engeman J" first="Jeffrey" last="Engeman">Jeffrey Engeman</name>
<affiliation wicri:level="2"><nlm:aff id="aff1"><addr-line>Department of Biology, University of South Dakota, Vermillion, South Dakota, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Biology, University of South Dakota, Vermillion, South Dakota</wicri:regionArea>
<placeName><region type="state">Dakota du Sud</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Grande, Terry" sort="Grande, Terry" uniqKey="Grande T" first="Terry" last="Grande">Terry Grande</name>
<affiliation wicri:level="2"><nlm:aff id="aff4"><addr-line>Department of Biology, Loyola University Chicago, Chicago, Illinois, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Biology, Loyola University Chicago, Chicago, Illinois</wicri:regionArea>
<placeName><region type="state">Illinois</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Hilton, Eric J" sort="Hilton, Eric J" uniqKey="Hilton E" first="Eric J." last="Hilton">Eric J. Hilton</name>
<affiliation wicri:level="2"><nlm:aff id="aff5"><addr-line>Department of Fisheries Science, Virginia Institute of Marine Science, College of William and Mary, Gloucester Point, Virginia, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Fisheries Science, Virginia Institute of Marine Science, College of William and Mary, Gloucester Point, Virginia</wicri:regionArea>
<placeName><region type="state">Virginie</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Kothari, Cartik" sort="Kothari, Cartik" uniqKey="Kothari C" first="Cartik" last="Kothari">Cartik Kothari</name>
<affiliation wicri:level="2"><nlm:aff id="aff2"><addr-line>National Evolutionary Synthesis Center, Durham, North Carolina, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>National Evolutionary Synthesis Center, Durham, North Carolina</wicri:regionArea>
<placeName><region type="state">Caroline du Nord</region>
</placeName>
</affiliation>
<affiliation wicri:level="4"><nlm:aff id="aff3"><addr-line>Department of Biology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Biology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina</wicri:regionArea>
<placeName><region type="state">Caroline du Nord</region>
<settlement type="city">Chapel Hill (Caroline du Nord)</settlement>
</placeName>
<orgName type="university">Université de Caroline du Nord à Chapel Hill</orgName>
</affiliation>
</author>
<author><name sortKey="Lapp, Hilmar" sort="Lapp, Hilmar" uniqKey="Lapp H" first="Hilmar" last="Lapp">Hilmar Lapp</name>
<affiliation wicri:level="2"><nlm:aff id="aff2"><addr-line>National Evolutionary Synthesis Center, Durham, North Carolina, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>National Evolutionary Synthesis Center, Durham, North Carolina</wicri:regionArea>
<placeName><region type="state">Caroline du Nord</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Lundberg, John G" sort="Lundberg, John G" uniqKey="Lundberg J" first="John G." last="Lundberg">John G. Lundberg</name>
<affiliation wicri:level="2"><nlm:aff id="aff6"><addr-line>Academy of Natural Sciences, Philadelphia, Pennsylvania, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Academy of Natural Sciences, Philadelphia, Pennsylvania</wicri:regionArea>
<placeName><region type="state">Pennsylvanie</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Midford, Peter E" sort="Midford, Peter E" uniqKey="Midford P" first="Peter E." last="Midford">Peter E. Midford</name>
<affiliation wicri:level="2"><nlm:aff id="aff2"><addr-line>National Evolutionary Synthesis Center, Durham, North Carolina, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>National Evolutionary Synthesis Center, Durham, North Carolina</wicri:regionArea>
<placeName><region type="state">Caroline du Nord</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Vision, Todd J" sort="Vision, Todd J" uniqKey="Vision T" first="Todd J." last="Vision">Todd J. Vision</name>
<affiliation wicri:level="2"><nlm:aff id="aff2"><addr-line>National Evolutionary Synthesis Center, Durham, North Carolina, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>National Evolutionary Synthesis Center, Durham, North Carolina</wicri:regionArea>
<placeName><region type="state">Caroline du Nord</region>
</placeName>
</affiliation>
<affiliation wicri:level="4"><nlm:aff id="aff3"><addr-line>Department of Biology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Biology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina</wicri:regionArea>
<placeName><region type="state">Caroline du Nord</region>
<settlement type="city">Chapel Hill (Caroline du Nord)</settlement>
</placeName>
<orgName type="university">Université de Caroline du Nord à Chapel Hill</orgName>
</affiliation>
</author>
<author><name sortKey="Westerfield, Monte" sort="Westerfield, Monte" uniqKey="Westerfield M" first="Monte" last="Westerfield">Monte Westerfield</name>
<affiliation wicri:level="2"><nlm:aff id="aff7"><addr-line>Institute of Neuroscience, University of Oregon, Eugene, Oregon, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Institute of Neuroscience, University of Oregon, Eugene, Oregon</wicri:regionArea>
<placeName><region type="state">Oregon</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Mabee, Paula M" sort="Mabee, Paula M" uniqKey="Mabee P" first="Paula M." last="Mabee">Paula M. Mabee</name>
<affiliation wicri:level="2"><nlm:aff id="aff1"><addr-line>Department of Biology, University of South Dakota, Vermillion, South Dakota, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Biology, University of South Dakota, Vermillion, South Dakota</wicri:regionArea>
<placeName><region type="state">Dakota du Sud</region>
</placeName>
</affiliation>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PMC</idno>
<idno type="pmid">20505755</idno>
<idno type="pmc">2873956</idno>
<idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2873956</idno>
<idno type="RBID">PMC:2873956</idno>
<idno type="doi">10.1371/journal.pone.0010708</idno>
<date when="2010">2010</date>
<idno type="wicri:Area/Pmc/Corpus">000182</idno>
<idno type="wicri:Area/Pmc/Curation">000182</idno>
<idno type="wicri:Area/Pmc/Checkpoint">000148</idno>
<idno type="wicri:Area/Ncbi/Merge">000080</idno>
<idno type="wicri:Area/Ncbi/Curation">000080</idno>
<idno type="wicri:Area/Ncbi/Checkpoint">000080</idno>
<idno type="wicri:Area/Main/Merge">000611</idno>
<idno type="wicri:Area/Main/Curation">000606</idno>
<idno type="wicri:Area/Main/Exploration">000606</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Evolutionary Characters, Phenotypes and Ontologies: Curating Data from the Systematic Biology Literature</title>
<author><name sortKey="Dahdul, Wasila M" sort="Dahdul, Wasila M" uniqKey="Dahdul W" first="Wasila M." last="Dahdul">Wasila M. Dahdul</name>
<affiliation wicri:level="2"><nlm:aff id="aff1"><addr-line>Department of Biology, University of South Dakota, Vermillion, South Dakota, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Biology, University of South Dakota, Vermillion, South Dakota</wicri:regionArea>
<placeName><region type="state">Dakota du Sud</region>
</placeName>
</affiliation>
<affiliation wicri:level="2"><nlm:aff id="aff2"><addr-line>National Evolutionary Synthesis Center, Durham, North Carolina, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>National Evolutionary Synthesis Center, Durham, North Carolina</wicri:regionArea>
<placeName><region type="state">Caroline du Nord</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Balhoff, James P" sort="Balhoff, James P" uniqKey="Balhoff J" first="James P." last="Balhoff">James P. Balhoff</name>
<affiliation wicri:level="2"><nlm:aff id="aff2"><addr-line>National Evolutionary Synthesis Center, Durham, North Carolina, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>National Evolutionary Synthesis Center, Durham, North Carolina</wicri:regionArea>
<placeName><region type="state">Caroline du Nord</region>
</placeName>
</affiliation>
<affiliation wicri:level="4"><nlm:aff id="aff3"><addr-line>Department of Biology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Biology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina</wicri:regionArea>
<placeName><region type="state">Caroline du Nord</region>
<settlement type="city">Chapel Hill (Caroline du Nord)</settlement>
</placeName>
<orgName type="university">Université de Caroline du Nord à Chapel Hill</orgName>
</affiliation>
</author>
<author><name sortKey="Engeman, Jeffrey" sort="Engeman, Jeffrey" uniqKey="Engeman J" first="Jeffrey" last="Engeman">Jeffrey Engeman</name>
<affiliation wicri:level="2"><nlm:aff id="aff1"><addr-line>Department of Biology, University of South Dakota, Vermillion, South Dakota, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Biology, University of South Dakota, Vermillion, South Dakota</wicri:regionArea>
<placeName><region type="state">Dakota du Sud</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Grande, Terry" sort="Grande, Terry" uniqKey="Grande T" first="Terry" last="Grande">Terry Grande</name>
<affiliation wicri:level="2"><nlm:aff id="aff4"><addr-line>Department of Biology, Loyola University Chicago, Chicago, Illinois, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Biology, Loyola University Chicago, Chicago, Illinois</wicri:regionArea>
<placeName><region type="state">Illinois</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Hilton, Eric J" sort="Hilton, Eric J" uniqKey="Hilton E" first="Eric J." last="Hilton">Eric J. Hilton</name>
<affiliation wicri:level="2"><nlm:aff id="aff5"><addr-line>Department of Fisheries Science, Virginia Institute of Marine Science, College of William and Mary, Gloucester Point, Virginia, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Fisheries Science, Virginia Institute of Marine Science, College of William and Mary, Gloucester Point, Virginia</wicri:regionArea>
<placeName><region type="state">Virginie</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Kothari, Cartik" sort="Kothari, Cartik" uniqKey="Kothari C" first="Cartik" last="Kothari">Cartik Kothari</name>
<affiliation wicri:level="2"><nlm:aff id="aff2"><addr-line>National Evolutionary Synthesis Center, Durham, North Carolina, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>National Evolutionary Synthesis Center, Durham, North Carolina</wicri:regionArea>
<placeName><region type="state">Caroline du Nord</region>
</placeName>
</affiliation>
<affiliation wicri:level="4"><nlm:aff id="aff3"><addr-line>Department of Biology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Biology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina</wicri:regionArea>
<placeName><region type="state">Caroline du Nord</region>
<settlement type="city">Chapel Hill (Caroline du Nord)</settlement>
</placeName>
<orgName type="university">Université de Caroline du Nord à Chapel Hill</orgName>
</affiliation>
</author>
<author><name sortKey="Lapp, Hilmar" sort="Lapp, Hilmar" uniqKey="Lapp H" first="Hilmar" last="Lapp">Hilmar Lapp</name>
<affiliation wicri:level="2"><nlm:aff id="aff2"><addr-line>National Evolutionary Synthesis Center, Durham, North Carolina, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>National Evolutionary Synthesis Center, Durham, North Carolina</wicri:regionArea>
<placeName><region type="state">Caroline du Nord</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Lundberg, John G" sort="Lundberg, John G" uniqKey="Lundberg J" first="John G." last="Lundberg">John G. Lundberg</name>
<affiliation wicri:level="2"><nlm:aff id="aff6"><addr-line>Academy of Natural Sciences, Philadelphia, Pennsylvania, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Academy of Natural Sciences, Philadelphia, Pennsylvania</wicri:regionArea>
<placeName><region type="state">Pennsylvanie</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Midford, Peter E" sort="Midford, Peter E" uniqKey="Midford P" first="Peter E." last="Midford">Peter E. Midford</name>
<affiliation wicri:level="2"><nlm:aff id="aff2"><addr-line>National Evolutionary Synthesis Center, Durham, North Carolina, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>National Evolutionary Synthesis Center, Durham, North Carolina</wicri:regionArea>
<placeName><region type="state">Caroline du Nord</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Vision, Todd J" sort="Vision, Todd J" uniqKey="Vision T" first="Todd J." last="Vision">Todd J. Vision</name>
<affiliation wicri:level="2"><nlm:aff id="aff2"><addr-line>National Evolutionary Synthesis Center, Durham, North Carolina, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>National Evolutionary Synthesis Center, Durham, North Carolina</wicri:regionArea>
<placeName><region type="state">Caroline du Nord</region>
</placeName>
</affiliation>
<affiliation wicri:level="4"><nlm:aff id="aff3"><addr-line>Department of Biology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Biology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina</wicri:regionArea>
<placeName><region type="state">Caroline du Nord</region>
<settlement type="city">Chapel Hill (Caroline du Nord)</settlement>
</placeName>
<orgName type="university">Université de Caroline du Nord à Chapel Hill</orgName>
</affiliation>
</author>
<author><name sortKey="Westerfield, Monte" sort="Westerfield, Monte" uniqKey="Westerfield M" first="Monte" last="Westerfield">Monte Westerfield</name>
<affiliation wicri:level="2"><nlm:aff id="aff7"><addr-line>Institute of Neuroscience, University of Oregon, Eugene, Oregon, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Institute of Neuroscience, University of Oregon, Eugene, Oregon</wicri:regionArea>
<placeName><region type="state">Oregon</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Mabee, Paula M" sort="Mabee, Paula M" uniqKey="Mabee P" first="Paula M." last="Mabee">Paula M. Mabee</name>
<affiliation wicri:level="2"><nlm:aff id="aff1"><addr-line>Department of Biology, University of South Dakota, Vermillion, South Dakota, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Biology, University of South Dakota, Vermillion, South Dakota</wicri:regionArea>
<placeName><region type="state">Dakota du Sud</region>
</placeName>
</affiliation>
</author>
</analytic>
<series><title level="j">PLoS ONE</title>
<idno type="eISSN">1932-6203</idno>
<imprint><date when="2010">2010</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass></textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en"><sec><title>Background</title>
<p>The wealth of phenotypic descriptions documented in the published articles, monographs, and dissertations of phylogenetic systematics is traditionally reported in a free-text format, and it is therefore largely inaccessible for linkage to biological databases for genetics, development, and phenotypes, and difficult to manage for large-scale integrative work. The Phenoscape project aims to represent these complex and detailed descriptions with rich and formal semantics that are amenable to computation and integration with phenotype data from other fields of biology. This entails reconceptualizing the traditional free-text characters into the computable Entity-Quality (EQ) formalism using ontologies.</p>
</sec>
<sec><title>Methodology/Principal Findings</title>
<p>We used ontologies and the EQ formalism to curate a collection of 47 phylogenetic studies on ostariophysan fishes (including catfishes, characins, minnows, knifefishes) and their relatives with the goal of integrating these complex phenotype descriptions with information from an existing model organism database (zebrafish, <ext-link ext-link-type="uri" xlink:href="http://zfin.org">http://zfin.org</ext-link>
). We developed a curation workflow for the collection of character, taxonomic and specimen data from these publications. A total of 4,617 phenotypic characters (10,512 states) for 3,449 taxa, primarily species, were curated into EQ formalism (for a total of 12,861 EQ statements) using anatomical and taxonomic terms from teleost-specific ontologies (Teleost Anatomy Ontology and Teleost Taxonomy Ontology) in combination with terms from a quality ontology (Phenotype and Trait Ontology). Standards and guidelines for consistently and accurately representing phenotypes were developed in response to the challenges that were evident from two annotation experiments and from feedback from curators.</p>
</sec>
<sec><title>Conclusions/Significance</title>
<p>The challenges we encountered and many of the curation standards and methods for improving consistency that we developed are generally applicable to any effort to represent phenotypes using ontologies. This is because an ontological representation of the detailed variations in phenotype, whether between mutant or wildtype, among individual humans, or across the diversity of species, requires a process by which a precise combination of terms from domain ontologies are selected and organized according to logical relations. The efficiencies that we have developed in this process will be useful for any attempt to annotate complex phenotypic descriptions using ontologies. We also discuss some ramifications of EQ representation for the domain of systematics.</p>
</sec>
</div>
</front>
<back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Grande, L" uniqKey="Grande L">L Grande</name>
</author>
<author><name sortKey="Bemis, W" uniqKey="Bemis W">W Bemis</name>
</author>
</analytic>
</biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct><analytic><author><name sortKey="Mayden, Rl" uniqKey="Mayden R">RL Mayden</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Royero, R" uniqKey="Royero R">R Royero</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Kailola, Pj" uniqKey="Kailola P">PJ Kailola</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Smith, B" uniqKey="Smith B">B Smith</name>
</author>
<author><name sortKey="Ashburner, M" uniqKey="Ashburner M">M Ashburner</name>
</author>
<author><name sortKey="Rosse, C" uniqKey="Rosse C">C Rosse</name>
</author>
<author><name sortKey="Bard, J" uniqKey="Bard J">J Bard</name>
</author>
<author><name sortKey="Bug, W" uniqKey="Bug W">W Bug</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Gruber, T" uniqKey="Gruber T">T Gruber</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Gkoutos, Gv" uniqKey="Gkoutos G">GV Gkoutos</name>
</author>
<author><name sortKey="Green, Ec" uniqKey="Green E">EC Green</name>
</author>
<author><name sortKey="Mallon, Am" uniqKey="Mallon A">AM Mallon</name>
</author>
<author><name sortKey="Hancock, Jm" uniqKey="Hancock J">JM Hancock</name>
</author>
<author><name sortKey="Davidson, D" uniqKey="Davidson D">D Davidson</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Sprague, J" uniqKey="Sprague J">J Sprague</name>
</author>
<author><name sortKey="Bayraktaroglu, L" uniqKey="Bayraktaroglu L">L Bayraktaroglu</name>
</author>
<author><name sortKey="Bradford, Y" uniqKey="Bradford Y">Y Bradford</name>
</author>
<author><name sortKey="Conlin, T" uniqKey="Conlin T">T Conlin</name>
</author>
<author><name sortKey="Dunn, N" uniqKey="Dunn N">N Dunn</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Mungall, C" uniqKey="Mungall C">C Mungall</name>
</author>
<author><name sortKey="Gkoutos, G" uniqKey="Gkoutos G">G Gkoutos</name>
</author>
<author><name sortKey="Washington, N" uniqKey="Washington N">N Washington</name>
</author>
<author><name sortKey="Lewis, S" uniqKey="Lewis S">S Lewis</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Washington, Nl" uniqKey="Washington N">NL Washington</name>
</author>
<author><name sortKey="Haendel, Ma" uniqKey="Haendel M">MA Haendel</name>
</author>
<author><name sortKey="Mungall, Cj" uniqKey="Mungall C">CJ Mungall</name>
</author>
<author><name sortKey="Ashburner, M" uniqKey="Ashburner M">M Ashburner</name>
</author>
<author><name sortKey="Westerfield, M" uniqKey="Westerfield M">M Westerfield</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Mik, I" uniqKey="Mik I">I Mikó</name>
</author>
<author><name sortKey="Deans, Ar" uniqKey="Deans A">AR Deans</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Sereno, Pc" uniqKey="Sereno P">PC Sereno</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Dahdul, Wm" uniqKey="Dahdul W">WM Dahdul</name>
</author>
<author><name sortKey="Lundberg, Jg" uniqKey="Lundberg J">JG Lundberg</name>
</author>
<author><name sortKey="Midford, Pe" uniqKey="Midford P">PE Midford</name>
</author>
<author><name sortKey="Balhoff, Jp" uniqKey="Balhoff J">JP Balhoff</name>
</author>
<author><name sortKey="Lapp, H" uniqKey="Lapp H">H Lapp</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Mabee, Pm" uniqKey="Mabee P">PM Mabee</name>
</author>
<author><name sortKey="Ashburner, M" uniqKey="Ashburner M">M Ashburner</name>
</author>
<author><name sortKey="Cronk, Q" uniqKey="Cronk Q">Q Cronk</name>
</author>
<author><name sortKey="Gkoutos, G" uniqKey="Gkoutos G">G Gkoutos</name>
</author>
<author><name sortKey="Haendel, M" uniqKey="Haendel M">M Haendel</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Mabee, Pm" uniqKey="Mabee P">PM Mabee</name>
</author>
<author><name sortKey="Arratia, G" uniqKey="Arratia G">G Arratia</name>
</author>
<author><name sortKey="Coburn, M" uniqKey="Coburn M">M Coburn</name>
</author>
<author><name sortKey="Haendel, M" uniqKey="Haendel M">M Haendel</name>
</author>
<author><name sortKey="Hilton, Ej" uniqKey="Hilton E">EJ Hilton</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Muller, Hm" uniqKey="Muller H">HM Muller</name>
</author>
<author><name sortKey="Kenny, Ee" uniqKey="Kenny E">EE Kenny</name>
</author>
<author><name sortKey="Sternberg, Pw" uniqKey="Sternberg P">PW Sternberg</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Lewis, Se" uniqKey="Lewis S">SE Lewis</name>
</author>
<author><name sortKey="Searle, Sm" uniqKey="Searle S">SM Searle</name>
</author>
<author><name sortKey="Harris, N" uniqKey="Harris N">N Harris</name>
</author>
<author><name sortKey="Gibson, M" uniqKey="Gibson M">M Gibson</name>
</author>
<author><name sortKey="Lyer, V" uniqKey="Lyer V">V Lyer</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Balhoff, Jp" uniqKey="Balhoff J">JP Balhoff</name>
</author>
<author><name sortKey="Dahdul, Wm" uniqKey="Dahdul W">WM Dahdul</name>
</author>
<author><name sortKey="Kothari, Cr" uniqKey="Kothari C">CR Kothari</name>
</author>
<author><name sortKey="Lapp, H" uniqKey="Lapp H">H Lapp</name>
</author>
<author><name sortKey="Lundberg, Jg" uniqKey="Lundberg J">JG Lundberg</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Fink, Sv" uniqKey="Fink S">SV Fink</name>
</author>
<author><name sortKey="Fink, Wl" uniqKey="Fink W">WL Fink</name>
</author>
</analytic>
</biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct><analytic><author><name sortKey="Eschmeyer, Wn" uniqKey="Eschmeyer W">WN Eschmeyer</name>
</author>
</analytic>
</biblStruct>
<biblStruct></biblStruct>
<biblStruct><analytic><author><name sortKey="Albert, Js" uniqKey="Albert J">JS Albert</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Armbruster, Jw" uniqKey="Armbruster J">JW Armbruster</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Bornbusch, Ah" uniqKey="Bornbusch A">AH Bornbusch</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Britto, Mr" uniqKey="Britto M">MR Britto</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Chang, Mm" uniqKey="Chang M">MM Chang</name>
</author>
<author><name sortKey="Maisey, Jg" uniqKey="Maisey J">JG Maisey</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="De Pinna, Mcc" uniqKey="De Pinna M">MCC de Pinna</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="De Pinna, Mcc" uniqKey="De Pinna M">MCC de Pinna</name>
</author>
<author><name sortKey="Ferraris, Cjj" uniqKey="Ferraris C">CJJ Ferraris</name>
</author>
<author><name sortKey="Vari, Rp" uniqKey="Vari R">RP Vari</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Fang, F" uniqKey="Fang F">F Fang</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Grande, T" uniqKey="Grande T">T Grande</name>
</author>
<author><name sortKey="Laten, H" uniqKey="Laten H">H Laten</name>
</author>
<author><name sortKey="Lopez, Ja" uniqKey="Lopez J">JA Lopez</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Grande, T" uniqKey="Grande T">T Grande</name>
</author>
<author><name sortKey="Poyato Ariza, Fj" uniqKey="Poyato Ariza F">FJ Poyato-Ariza</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Johnson, Gd" uniqKey="Johnson G">GD Johnson</name>
</author>
<author><name sortKey="Patterson, C" uniqKey="Patterson C">C Patterson</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Poyato Ariza, Fj" uniqKey="Poyato Ariza F">FJ Poyato-Ariza</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Sanger, Tj" uniqKey="Sanger T">TJ Sanger</name>
</author>
<author><name sortKey="Mccune, Ar" uniqKey="Mccune A">AR McCune</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Sawada, Y" uniqKey="Sawada Y">Y Sawada</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Schaefer, Sa" uniqKey="Schaefer S">SA Schaefer</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Schaefer, Sa" uniqKey="Schaefer S">SA Schaefer</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Sidlauskas, Bl" uniqKey="Sidlauskas B">BL Sidlauskas</name>
</author>
<author><name sortKey="Vari, Rp" uniqKey="Vari R">RP Vari</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Toledo Piza, M" uniqKey="Toledo Piza M">M Toledo-Piza</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Toledo Piza, M" uniqKey="Toledo Piza M">M Toledo-Piza</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Vari, Rp" uniqKey="Vari R">RP Vari</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Vari, Rp" uniqKey="Vari R">RP Vari</name>
</author>
<author><name sortKey="Harold, As" uniqKey="Harold A">AS Harold</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Vigliotta, Tr" uniqKey="Vigliotta T">TR Vigliotta</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Zanata, Am" uniqKey="Zanata A">AM Zanata</name>
</author>
<author><name sortKey="Vari, Rp" uniqKey="Vari R">RP Vari</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Arratia, G" uniqKey="Arratia G">G Arratia</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Buckup, Pa" uniqKey="Buckup P">PA Buckup</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Cavender, Tm" uniqKey="Cavender T">TM Cavender</name>
</author>
<author><name sortKey="Coburn, Mm" uniqKey="Coburn M">MM Coburn</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Coburn, Mm" uniqKey="Coburn M">MM Coburn</name>
</author>
<author><name sortKey="Cavender, Tm" uniqKey="Cavender T">TM Cavender</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Grande, T" uniqKey="Grande T">T Grande</name>
</author>
<author><name sortKey="Grande, L" uniqKey="Grande L">L Grande</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Lucena, Cas" uniqKey="Lucena C">CAS Lucena</name>
</author>
<author><name sortKey="Menezes, Na" uniqKey="Menezes N">NA Menezes</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Lundberg, Jg" uniqKey="Lundberg J">JG Lundberg</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Malabarba, Lr" uniqKey="Malabarba L">LR Malabarba</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Smith, Gr" uniqKey="Smith G">GR Smith</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Soares Porto, Lm" uniqKey="Soares Porto L">LM Soares-Porto</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Weitzman, Sh" uniqKey="Weitzman S">SH Weitzman</name>
</author>
<author><name sortKey="Menezes, Na" uniqKey="Menezes N">NA Menezes</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Zaragueta Bagils, R" uniqKey="Zaragueta Bagils R">R Zaragueta Bagils</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Bockmann, Fa" uniqKey="Bockmann F">FA Bockmann</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Chen, X P" uniqKey="Chen X">X-P Chen</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="De Pinna, Mcc" uniqKey="De Pinna M">MCC de Pinna</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Friel, Jp" uniqKey="Friel J">JP Friel</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Mo, T" uniqKey="Mo T">T Mo</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Shibatta, Oa" uniqKey="Shibatta O">OA Shibatta</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Siebert, Dh" uniqKey="Siebert D">DH Siebert</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Di Dario, F" uniqKey="Di Dario F">F Di Dario</name>
</author>
</analytic>
</biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct><analytic><author><name sortKey="Maddison, Wp" uniqKey="Maddison W">WP Maddison</name>
</author>
<author><name sortKey="Maddison, Dr" uniqKey="Maddison D">DR Maddison</name>
</author>
</analytic>
</biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct><analytic><author><name sortKey="Mungall, Cj" uniqKey="Mungall C">CJ Mungall</name>
</author>
<author><name sortKey="Gkoutos, Gv" uniqKey="Gkoutos G">GV Gkoutos</name>
</author>
<author><name sortKey="Smith, Cl" uniqKey="Smith C">CL Smith</name>
</author>
<author><name sortKey="Haendel, Ma" uniqKey="Haendel M">MA Haendel</name>
</author>
<author><name sortKey="Lewis, Se" uniqKey="Lewis S">SE Lewis</name>
</author>
</analytic>
</biblStruct>
<biblStruct></biblStruct>
<biblStruct><analytic><author><name sortKey="Fricke, R" uniqKey="Fricke R">R Fricke</name>
</author>
<author><name sortKey="Eschmeyer, Wn" uniqKey="Eschmeyer W">WN Eschmeyer</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Clarke, Ja" uniqKey="Clarke J">JA Clarke</name>
</author>
<author><name sortKey="Ksepka, Dt" uniqKey="Ksepka D">DT Ksepka</name>
</author>
<author><name sortKey="Smith, Na" uniqKey="Smith N">NA Smith</name>
</author>
<author><name sortKey="Norell, Ma" uniqKey="Norell M">MA Norell</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Santagata, S" uniqKey="Santagata S">S Santagata</name>
</author>
<author><name sortKey="Cohen, Bl" uniqKey="Cohen B">BL Cohen</name>
</author>
</analytic>
</biblStruct>
</listBibl>
</div1>
</back>
</TEI>
<affiliations><list><country><li>États-Unis</li>
</country>
<region><li>Caroline du Nord</li>
<li>Dakota du Sud</li>
<li>Illinois</li>
<li>Oregon</li>
<li>Pennsylvanie</li>
<li>Virginie</li>
</region>
<settlement><li>Chapel Hill (Caroline du Nord)</li>
</settlement>
<orgName><li>Université de Caroline du Nord à Chapel Hill</li>
</orgName>
</list>
<tree><country name="États-Unis"><region name="Dakota du Sud"><name sortKey="Dahdul, Wasila M" sort="Dahdul, Wasila M" uniqKey="Dahdul W" first="Wasila M." last="Dahdul">Wasila M. Dahdul</name>
</region>
<name sortKey="Balhoff, James P" sort="Balhoff, James P" uniqKey="Balhoff J" first="James P." last="Balhoff">James P. Balhoff</name>
<name sortKey="Balhoff, James P" sort="Balhoff, James P" uniqKey="Balhoff J" first="James P." last="Balhoff">James P. Balhoff</name>
<name sortKey="Dahdul, Wasila M" sort="Dahdul, Wasila M" uniqKey="Dahdul W" first="Wasila M." last="Dahdul">Wasila M. Dahdul</name>
<name sortKey="Engeman, Jeffrey" sort="Engeman, Jeffrey" uniqKey="Engeman J" first="Jeffrey" last="Engeman">Jeffrey Engeman</name>
<name sortKey="Grande, Terry" sort="Grande, Terry" uniqKey="Grande T" first="Terry" last="Grande">Terry Grande</name>
<name sortKey="Hilton, Eric J" sort="Hilton, Eric J" uniqKey="Hilton E" first="Eric J." last="Hilton">Eric J. Hilton</name>
<name sortKey="Kothari, Cartik" sort="Kothari, Cartik" uniqKey="Kothari C" first="Cartik" last="Kothari">Cartik Kothari</name>
<name sortKey="Kothari, Cartik" sort="Kothari, Cartik" uniqKey="Kothari C" first="Cartik" last="Kothari">Cartik Kothari</name>
<name sortKey="Lapp, Hilmar" sort="Lapp, Hilmar" uniqKey="Lapp H" first="Hilmar" last="Lapp">Hilmar Lapp</name>
<name sortKey="Lundberg, John G" sort="Lundberg, John G" uniqKey="Lundberg J" first="John G." last="Lundberg">John G. Lundberg</name>
<name sortKey="Mabee, Paula M" sort="Mabee, Paula M" uniqKey="Mabee P" first="Paula M." last="Mabee">Paula M. Mabee</name>
<name sortKey="Midford, Peter E" sort="Midford, Peter E" uniqKey="Midford P" first="Peter E." last="Midford">Peter E. Midford</name>
<name sortKey="Vision, Todd J" sort="Vision, Todd J" uniqKey="Vision T" first="Todd J." last="Vision">Todd J. Vision</name>
<name sortKey="Vision, Todd J" sort="Vision, Todd J" uniqKey="Vision T" first="Todd J." last="Vision">Todd J. Vision</name>
<name sortKey="Westerfield, Monte" sort="Westerfield, Monte" uniqKey="Westerfield M" first="Monte" last="Westerfield">Monte Westerfield</name>
</country>
</tree>
</affiliations>
</record>
Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Ticri/CIDE/explor/OcrV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000606 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000606 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien |wiki= Ticri/CIDE |area= OcrV1 |flux= Main |étape= Exploration |type= RBID |clé= PMC:2873956 |texte= Evolutionary Characters, Phenotypes and Ontologies: Curating Data from the Systematic Biology Literature }}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:20505755" \ | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \ | NlmPubMed2Wicri -a OcrV1
This area was generated with Dilib version V0.6.32. |